Analysis of Inhibitory Potential of Bioactive Compounds from Langusei (Ficus minhassae Tesym. & De Vr.) against SARS-CoV-2 using an in silico Approach
DOI:
https://doi.org/10.35799/jbcw.v1i1.35722Keywords:
langusei, Ficus minahassae, β-sitosterol, phytyl fatty acid esters, SARS-CoV-2, COVID-19Abstract
The langusei plant (Ficus minhassae (Teijsm. & De Vriese) Miq.) is widely believed to have numerous health benefits and is frequently processed into traditional medicine to treat a variety of diseases. This study aimed to investigate the potential inhibition of bioactive compounds from langusei leaves against SARS-CoV-2 using an in silico approach.The compounds docked to receptors were obtained from the PubChem site, while the receptors were obtained from the Protein Data Bank site. The docking process was carried out using Autodock Vina software. The best docking result was the lowest binding free energy value (kcal/mol). The ligands used in this study have a relatively high binding affinity, particularly the β-sitosterol with the receptor-binding domain, which has a binding affinity of -8.4 kcal/mol. Additionally, the phytyl fatty acid ester has a value of -7.3 kcal/mol when bound to the spike glycoprotein (closed state). According to the findings of this study, β-sitosterol and phytyl fatty acid esters had the highest binding affinity for several SARS-CoV-2 receptors. As a result, these two compounds found in langusei leaves have the potential to be developed as anti-SARS-CoV-2 drugs.References
Alberca, R. W., Teixeira, F. M. E., Beserra, D. R., de Oliveira, E. A., Andrade, M. M. de S., Pietrobon, A. J., & Sato, M. N. (2020). Perspective: The Potential Effects of Naringenin in COVID-19. Frontiers in Immunology, 11, 570919. https://doi.org/10.3389/fimmu.2020.570919
Apostol, P. G., De Los Reyes, M. M., Mandia, E. H., Shen, C. C., & Ragasa, C. Y. (2016). Chemical constituents of Ficus minahassae (Teijsm. & de Vriese) Miq. Der Pharma Chemica, 8(20), 220–223.
Chang, G.-G. (2009). Quaternary Structure of the SARS Coronavirus Main Protease. Molecular Biology of the SARS-Coronavirus, 115–128. https://doi.org/10.1007/978-3-642-03683-5_8
Dutta, M., Nezam, M., Chowdhury, S., Rakib, A., Paul, A., Sami, S. A., Uddin, M. Z., Rana, M. S., Hossain, S., Effendi, Y., Idroes, R., Tallei, T., Alqahtani, A. M., & Emran, T. Bin. (2021). Appraisals of the Bangladeshi Medicinal Plant Calotropis gigantea Used by Folk Medicine Practitioners in the Management of COVID-19: A Biochemical and Computational Approach. Frontiers in Molecular Biosciences, 8(May), 1–16. https://doi.org/10.3389/fmolb.2021.625391
Huang, Y., Yang, C., Xu, X. feng, Xu, W., & Liu, S. wen. (2020). Structural and functional properties of SARS-CoV-2 spike protein: potential antivirus drug development for COVID-19. In Acta Pharmacologica Sinica (Vol. 41, Issue 9, pp. 1141–1149). Springer Nature. https://doi.org/10.1038/s41401-020-0485-4
Jaiswal, G., & Kumar, V. (2020). In-silico design of a potential inhibitor of SARS-CoV-2 S protein. PloS One, 15(10), e0240004–e0240004. https://doi.org/10.1371/journal.pone.0240004
Khairan, K., Idroes, R., Tallei, T. E., Nasim, M. J., & Jacob, C. (2021). Bioactive Compounds from Medicinal Plants and Their Possible Effect as Therapeutics Agents against COVID-19: A Review. Current Nutrition & Food Science, 17. https://doi.org/10.2174/1573401317999210112201439
Ladokun, O. A., Abiola, A., Okikiola, D., & Ayodeji, F. (2018). GC-MS and Molecular Docking Studies of Hunteria umbellata Methanolic Extract As a Potent Anti-Diabetic. Informatics in Medicine Unlocked, 13(August), 1–8. https://doi.org/10.1016/j.imu.2018.08.001
Mahmud, S., Mita, M. A., Biswas, S., Paul, G. K., Promi, M. M., Afrose, S., Hasan, R., Shimu, S. S., Zaman, S., Uddin, S., Tallei, T. E., Emran, T. Bin, & Saleh, A. (2021). Molecular docking and dynamics study to explore phytochemical ligand molecules against the main protease of SARS-CoV-2 from extensive phytochemical datasets. Expert Review of Clinical Pharmacology, null-null. https://doi.org/10.1080/17512433.2021.1959318
Perumal, P., Sowmya, S., Pratibha, P., Vidya, B., Anusooriya, P., Starlin, T., Vasanth, R., Sharmila, D., & Gopalakrishnan, V. (2014). Identification of novel PPAR$γ$ agonist from GC-MS analysis of ethanolic extract of Cayratia trifolia (L.): a computational molecular simulation studies -. Journal of Applied Pharmaceutical Science, 4, 6–11.
Rakib, A., Paul, A., Nazim Uddin Chy, M., Sami, S. A., Baral, S. K., Majumder, M., Tareq, A. M., Amin, M. N., Shahriar, A., Zia Uddin, M., Dutta, M., Tallei, T. E., Emran, T. Bin, & Simal-Gandara, J. (2020). Biochemical and Computational Approach of Selected Phytocompounds from Tinospora crispa in the Management of COVID-19. Molecules, 25(17). https://doi.org/10.3390/molecules25173936
Sailah, I., Tumilaar, S. G., & Lombogia, L. T. (2021). Molecular Docking and Dynamics Simulations Study of Selected Phytoconstituents of “ Pangi †( Pangium edule Reinw ) Leaf as Anti-SARS-CoV-2. 150(October), 925–937.
Shetty, R., Ghosh, A., Honavar, S. G., Khamar, P., & Sethu, S. (2020). Therapeutic opportunities to manage COVID-19/SARS-CoV-2 infection: Present and future. Indian Journal of Ophthalmology, 68(5), 693–702. https://doi.org/10.4103/ijo.IJO_639_20
Singhal, T. (2020). A Review of Coronavirus Disease-2019 (COVID-19). Indian Journal of Pediatrics, 87(4), 281–286. https://doi.org/10.1007/s12098-020-03263-6
Subissi, L., Posthuma, C. C., Collet, A., Zevenhoven-Dobbe, J. C., Gorbalenya, A. E., Decroly, E., Snijder, E. J., Canard, B., & Imbert, I. (2014). One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities. Proceedings of the National Academy of Sciences, 111(37), E3900--E3909. https://doi.org/10.1073/pnas.1323705111
Tallei, T. E., Tumilaar, S. G., Lombogia, L. T., Adam, A. A., Sakib, S. A., Emran, T. B., & Idroes, R. (2021). Potential of betacyanin as inhibitor of SARS-CoV-2 revealed by molecular docking study. IOP Conference Series: Earth and Environmental Science, 711(1). https://doi.org/10.1088/1755-1315/711/1/012028
Tallei, T E, Linelejan, Y. T., Umboh, S. D., Adam, A. A., Muslem, & Idroes, R. (2020). Endophytic Bacteria isolated from the leaf of Langusei (Ficus minahassaeTesym. & De Vr.) and their antibacterial activities. IOP Conference Series: Materials Science and Engineering, 796, 12047. https://doi.org/10.1088/1757-899x/796/1/012047
Tallei, Trina Ekawati, Tumilaar, S. G., Niode, N. J., Fatimawali, Kepel, B. J., Idroes, R., Effendi, Y., Sakib, S. A., & Emran, T. Bin. (2020). Potential of Plant Bioactive Compounds as SARS-CoV-2 Main Protease (Mpro) and Spike (S) Glycoprotein Inhibitors: A Molecular Docking Study. Scientifica, 2020. https://doi.org/10.1155/2020/6307457
Tumilaar, S. G., Fatimawali, F., Niode, N. J., Effendi, Y., Idroes, R., Adam, A. A., Rakib, A., Emran, T. Bin, & Tallei, T. E. (2021). The potential of leaf extract of Pangium edule Reinw as HIV-1 protease inhibitor: A computational biology approach. Journal of Applied Pharmaceutical Science. https://doi.org/10.7324/JAPS.2021.110112
Downloads
Published
Issue
Section
License
Authors who publish with the Journal of Biotechnology and Conservation in Wallacea agree to the following terms:
- Authors retain copyright and grant the journal the right of first publication with the work simultaneously licensed under a Creative Commons Attribution License (CC BY-SA 4.0) that allows others to share the work with an acknowledgment of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgment of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work. (See The Effect of Open Access)